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  <front>
    <journal-meta id="journal-meta-1">
      <journal-id journal-id-type="nlm-ta">Innovative Journal</journal-id>
      <journal-id journal-id-type="publisher-id">Innovative Journal</journal-id>
      <journal-id journal-id-type="journal_submission_guidelines">http://www.innovativejournal.in/index.php/</journal-id>
      <journal-title-group>
        <journal-title>Journal of Medical Research and Health Sciences</journal-title>
      </journal-title-group>
      <issn publication-format="electronic">2589-9031</issn>
      <issn publication-format="print">2589-9023</issn>
    </journal-meta>
    <article-meta id="article-meta-1">
      <article-id pub-id-type="doi">https://doi.org/10.15520/jmrhs.v4i7.376</article-id>
      <article-categories>
        <subj-group>
          <subject>Research Article</subject>
        </subj-group>
      </article-categories>
      <title-group>
        <article-title id="at-724d43ff2435">
          <bold id="strong-1">Molecular study for <italic id="emphasis-1">Escherichia coli </italic>isolates causing diarrhea at children</bold>
        </article-title>
        <alt-title alt-title-type="right-running-head">Molecular study for Escherichia coli isolates causing diarrhea at children</alt-title>
      </title-group>
      <contrib-group>
        <contrib contrib-type="author" corresp="yes">
          <contrib-id contrib-id-type="orcid"/>
          <name id="n-eefac42092ff">
            <given-names>Muna Abdul Imam AL-Mazini</given-names>
          </name>
          <xref id="x-f191c2795406" rid="a-f5ff84c71b8e" ref-type="aff">1</xref>
        </contrib>
        <aff id="a-f5ff84c71b8e">
          <institution>Biology Department- Science College, Basra University, IRAQ</institution>
        </aff>
      </contrib-group>
      <pub-date date-type="pub">
        <day>19</day>
        <month>7</month>
        <year>2021</year>
      </pub-date>
      <volume>4</volume>
      <issue>7</issue>
      <fpage>1329</fpage>
      <history>
        <date date-type="received">
          <day>20</day>
          <month>5</month>
          <year>2021</year>
        </date>
        <date date-type="accepted">
          <day>7</day>
          <month>7</month>
          <year>2021</year>
        </date>
        <date date-type="rev-recd">
          <day>15</day>
          <month>6</month>
          <year>2021</year>
        </date>
      </history>
      <permissions>
        <copyright-statement>The Authors. Published by Medical Editor and Educational Research Publishers Ltd. This is an open access article under the CC BY-NC-ND license (https://creativecommons.org/licenses/by-nc-nd/4.0/)</copyright-statement>
        <copyright-year>2021</copyright-year>
      </permissions>
      <abstract id="abstract-cb38b178b295">
        <title id="abstract-title-b3b730271b8a">Abstract</title>
        <p id="paragraph-4159c0da696d">. </p>
      </abstract>
      <kwd-group id="kwd-group-1">
        <title>Keywords</title>
        <kwd/>
      </kwd-group>
    </article-meta>
  </front>
  <body>
    <sec>
      <title id="t-715ce59e0baa">Introduction</title>
      <p id="p-97442ab5824c"> Inflammation of the stomach and intestine is a major problem because of the pathological conditions it causes Diarrhea, which is one of reasons for the high death rates among children, especially in developing countries (Bioshop, 2006; Kandakai - Olukem <italic id="e-a1d216782494">et al</italic>., 2009). </p>
      <p id="p-d9a80f06bf1f"> There are many causes of diarrhea, including viruses (Koh <italic id="emphasis-2">et al</italic>., 2008) and parasites (Nelson <italic id="emphasis-3">et al</italic>., 2004) in addition to bacteria . <italic id="emphasis-4">Esc</italic>her<italic id="emphasis-5">ichia coli </italic> is one of the main causes of diarrhea, and it includes a group of strains that cause diarrhea in children, including them<italic id="emphasis-6"/></p>
      <p id="p-7d43a99ccb7e">Enteropathogenic <italic id="emphasis-7">E.coli</italic> / EPEC, Enterotoxigenic <italic id="emphasis-8">E. coli</italic>, ETEC and Enteroaggregative <italic id="emphasis-9">E.coli</italic>. EAEC Enterohemorrhagic <italic id="emphasis-10">E. coli</italic> / EHEC ( Boisen <italic id="emphasis-11">et al</italic>., 2009).</p>
      <p id="clipboard_property"> The coliform bacteria have a number of virulence factors that influence the body's defenses to cause infection, including adhesion factor, toxin production, protease enzyme production, capsule, and iron acquisition system ( Li <italic id="emphasis-12">et al.</italic>, 2009). On the other hand, <italic id="emphasis-13">Escherichia coli </italic> produces enzymes Broad-spectrum-lactamases (ESβLs), Extended Spectrum β-Lactamases ( Rodriguez - Bano <italic id="emphasis-14">et al</italic>., 2009), which help them to exhibit multiple antibiotic resistance that aids in the spread of infection (Alsterlund <italic id="emphasis-15">et al</italic>., 2009), Moreover, these enzymes may be carried on the plasmid, as well as other virulence factors, and thus it is possible to transfer these traits between bacterial species, which increases the incidence of infection (Zahid <italic id="emphasis-16">et al</italic>., 2009). And in view of the findings of studies of increased rates of diarrhea, especially among children, as well as an increase in the rate of resistance, which causes an increase in the mortality rate among children.Accordingly, this study came to aim at: 1- Knowledge strains of <italic id="emphasis-17">E</italic>. <italic id="emphasis-18">coli</italic> that cause diarrhea in children under two years of age and sensitivity for antibiotics.2- Study of some virulence factors that <italic id="emphasis-19">E. coli</italic> bacteria possess.3- Study of the coded genetic determinants of adhesion factor and antimicrobial resistance in <italic id="emphasis-20">E. coli</italic>. </p>
      <p id="p-1ccf138afff0"> <bold id="s-edb1b9538cb4">1- <italic id="e-7f1d7b54cb31">Escherichia coli</italic>:</bold> The bacterium <italic id="e-51c367d1ab8e">Escherichia coli</italic> was first described by the German pediatrician Theodor Escherich in 1885, when it was isolated from the feces of healthy newborns as commensal bacteria. <italic id="e-4bbfcc8025d5">E.coli</italic> strains and their role in the spread of diarrhea among children have been known (Feng <italic id="e-6c913e9e7fc5">et al</italic>., 2002). In 1894, the scientist Escherich managed to isolate her by young girls have a UTI Urinary that these bacteria reach the bladder by the ascending route (Sussman, 1985).Tract Infection /, and it has been suggested <bold id="strong-2">2- General characteristics of <italic id="e-a168775075a8">Escherichia coli</italic>:</bold> Is short, gram negative bacilli, present separately or in pairs, which grow in optional anaerobic .Its optimum growth is (37) , driven by surrounding flagella.Non-sporeforming, and some of their capsule strains may possess (Darnton <italic id="e-92ef2291775a">et al</italic>., 2007).. <italic id="e-f9df669360a2"> E. coli</italic> colonies appear on (EMB Eosin-Methylene blue agar) / with a metallic green sheen. It also has the ability to ferment the lactose sugar, so its colonies will appear pink on the MacConkey agar(Nester <italic id="e-b72e10a91a97">et al</italic>., 1998). Most of the strains of these bacteria are produced hemolysin on the blood agar.(Boon <italic id="e-13b3297b5bd8">et al</italic>., 2006).</p>
      <p id="p-d7d0c0c12d50"> <italic id="e-715676a2a2e0"> E.coli</italic> have the ability to produce two types of enterotoxins. First type is heat stable Heat Stable/ST and the type Heat labile / LT (Guerrant and Steiner, 2005), also some of its strains have the ability to produce a toxin with a cellular effect. (Cytotoxigenic) (Alam and Zurek, 2004) therefore it is often called ( Verotoxin - Producing E.coli)(VTEC) Or the term (Shigatoxin - Producing E. coli / STEC) ( Sela <italic id="e-e4b5f341c2ba">et al</italic>., 2005), </p>
      <p id="p-f26ec4556378"> As for biological chemical tests, <italic id="e-9028aea05f46">E.coli</italic> are shown as a result.Positive for the Catalase test and negative for Oxidase test, a positive result for Indole Production test , Methyl Red Test, Citrate Utilization test and Vogas-Proskaur test, it has the ability to reduce nitrate to nitrite, degrade gelatin, it does not produce H2S gas as well as it does not degrade urea. (Crichton, 1996)<bold id="strong-3"> </bold><bold id="strong-4">3- Classification of <italic id="e-816f944bf8d7">Escherichia coli</italic> :</bold><italic id="e-a130600862ec"> E. coli</italic> were classified in the fifth group according to the classification (Bergey's manual), which includes faculative anaerobic gram negative rods which belong to Enterobacteriaceae. (Donnenberg, 2005). As for the serological classification of <italic id="e-debe658e39b7">E.</italic> <italic id="e-fcd3ebfeb52a">coli</italic>, Kaffman proposed at 1940: A special system to classify them based on the autigenic antigen Somatic antigen ( O-Ag), Flagellar antigen (H-Ag) and Capsular antigen (K-Ag), based on the agglutination test for classifying strains of the species (Brooks <italic id="e-e50887028e74">et al</italic>., 2004). The somatic antigen is also called the cell wall antigen, (Cell wall antigen), consisting of long chains of lipopolysaccharide (Feng <italic id="e-d1d2fb795710">et al</italic>., 2005). The capsule antigen is a polysaccharide that covers antigens, while the flagellar antigen is formed from protein. (Kaper <italic id="e-eb67f81ebcac">et al</italic>., 2004).</p>
      <p id="p-b62f0d9b2f5f"> Serotypes of the pathogen Escherichia coli strain were distinguished Enteropathogenic E. coli (EPEC), which includes (12) different serogroups ( Pabst <italic id="e-7b3a9acf11ce">et al</italic>., 2003) Table (1), and new serotypes were also distinguished which (Belongs to the Enteropathogenic E. coli (EPEC) strain, which is: - (O39: NM, O88: H25, O111: H8, O111: H9, O126: H12, O127: H4, O142: H45, O157: H8, O157: H45) (Jensen <italic id="emphasis-21">et al</italic>., 2007).</p>
      <p id="p-9101ef30043a">Table (1): Serotyping of Enteropathogenic <italic id="e-57e05855456c">E.coli</italic> (EPEC) (Jensen <italic id="e-77b202a911ed">et al.</italic>, 2007)</p>
      <fig id="f-141fc0968644" position="anchor" orientation="portrait" fig-type="graphic">
        <label>Figure 1 </label>
        <caption id="c-62ae2dcb82d7">
          <title id="t-d2b308cc343d"/>
        </caption>
        <graphic id="g-6e650965f361" xlink:href="https://typeset-prod-media-server.s3.amazonaws.com/article_uploads/d456c8b9-df7c-416b-be7c-d2d71dd8cab5/image/1bb727b4-df76-4658-a412-8ba18b6c2276-uimage.png"/>
      </fig>
      <p id="p-d7a1dbc98ed9"><bold id="s-5c34d200e837">4- Pathogenicity of <italic id="e-cecb82380127">Escherichia coli</italic></bold><italic id="e-299cd35b767e"> E. coli</italic> have the ability to spread from their natural location in the human body and to cause opportunistic infections in other parts of the body as well as their ability to cause various hospital-acquired infections (Brooks <italic id="e-c33ab96a6a06">et al</italic>., 2004; Olowe <italic id="e-3b3d94130d71">et al</italic>., 2004). Despite the fact that this bacteria lives normally in the intestine of healthy people, some of its strains can cause extra-intestinal infections (Extraintestinal infections), and intestinal infections in both immunocompromised and healthy subjects ( Paterson and Bonomo, 2005). <italic id="e-f853b4595c6b">E. coli</italic> is one of the most common types of bacteria that cause urinary tract infection (UTI) , with an infection rate of (80%). Especially among women ( Russo and Johnson, 2003),  These bacteria are also one of the most important bacterial causes of diarrhea, especially among children . In addition to their role in causing traveler's diarrhea (Diarrhoea Traveler's) ( Olowe <italic id="e-d2944ad177b2">et al</italic>., 2003).Some strains of <italic id="e-51200ecfecf6">E. coli</italic> have the ability to cause infection with hemolytic uremic Syndrome / HUS, which is associated with cases of bloody diarrhea, especially in children and the elderly . It also causes hemorrhagic colitis / HC.(Vimont <italic id="e-1ce869724a5e">et al.</italic>, 2006).</p>
      <p id="p-a7045df78e3a">
        <italic id="e-31589edb41e0"> </italic>
      </p>
      <p id="p-438135e49f17"> These bacteria are among the causes of wound and burn infections, meningitis and mastitis , as well as cases of blood poisoning (Mokady <italic id="e-bc5f98e1982a">et al</italic>., 2005). <italic id="e-531c2d7732ee">E. coli</italic> are also a source of exposure in children to infection with bacteramia, especially in rural areas (Berkley <italic id="e-54c00e4dcaee">et al.,</italic> 2005). 5 – <bold id="s-fc1a6cc26cd9">Causes of diarrhea: </bold><bold id="s-742d4ed011ed"> </bold>Diarrhea is a major problem in various countries of the world, as it is one of the causes of the high death rates among children, especially in developing countries ( Tambekar and Barginwar, 2005). Recent studies have indicated an increase in mortality rates due to infection. nearly two million people in the world die every year due to diarrhea, most of them are children under the age of five ( Melvin and Heyman, 2006). The etiology of diarrhea varies with respect to disease microorganisms. As most research and studies indicate that bacteria are more types microorganisms cause diarrhea in children especially <italic id="e-9e2ce8141bf9">Escherichia coli</italic>, <italic id="e-a100bc27cbe6">Salmonella</italic>, <italic id="e-b17bb6536eb3">Shigella dysenteriae</italic>, and <italic id="e-7ccfcb27b347">Vibrio</italic> <italic id="e-ff87fecd5f11">cholerae </italic> , as well as <italic id="e-80fffb0ac95c">Campylobacter jejuni</italic> (Coker <italic id="e-b3a87237d945">et al</italic>., 2002). There are other types of viruses that cause diarrhea, including the Norwalk virus, Cytomegalo virus, Viral hepatitis, Herpes Simplex virus, as well as both Calici virus and Astro virus (Jawetz <italic id="e-57c20e6d22e9">et al</italic>., 2004).Some parasites are also causes of diarrhea, and they are found in several types. Each of them has a role in causing diarrhea, including Entamoeba histolytica (Nelson <italic id="e-0bba3cc448cd">et al.</italic>, 2004) and (Jawetz et al., 2004) Giardia Lamblia as well as Cryptosporidium . There are many types of diarrhea, depending on the pathogen, including watery diarrhea acute watery diarrhoea, which occurs as a result of invasion of the small intestine by the toxin by microorganisms, including the bacterium Vibrio cholera , which is widespread in most countries of the world, especially poor countries, and the rate of deaths resulting from them reaches one million deaths per year (Nelson <italic id="emphasis-22">et al</italic>., 2004), acute diarrhea is characterized by Large quantities of fluids and salts (Sack <italic id="emphasis-23">et al</italic>., 1980), as the duration of this type of diarrhea is less than (10) days, and it is accompanied by fever and vomiting (Melvin and Heyman, 2006). It is associated with acute abdominal pain (Nelson <italic id="emphasis-24">et al., </italic> 2004). As for dysentery diarrhea (Acute Dysentery Diarrhea) It occurs as a result of the invasion of the small intestine by bacteria <italic id="emphasis-25">Shigella dysenteriae</italic> ( Nataro and Barry, 2008). These bacteria cause severe bloody diarrhea that is accompanied by mucus and blood (WHO, 1994), which is also known as (Shigellosis) after the bacteria that cause it . Also, diarrhea caused by pathological microorganisms, especially <italic id="emphasis-26">E. coli</italic>, This bacterium is one of the common bacterial species in human pathogenesis (Forbes <italic id="emphasis-27">et al</italic>., 2002). <italic id="emphasis-28"> E. coli</italic> bacteria includes several strains of diseases that cause diarrhea, namely: -<bold id="s-016ac0681074">5-1- Enteropathogenic <italic id="emphasis-29">Escherichia coli</italic> (EPEC):</bold> This pattern has the advantage of being one of the main causes of diarrhea in infants. In many developing countries , This pattern is similar to ETEC, but does not have factor antigens colonization Factor Antigens ( CFAs ) and it does not produce Enterotoxins represented by both Heat Stable and Heat Labile (Nguyen <italic id="emphasis-30">et al</italic>., 2006).  This pattern EPEC possesses a number of virulence factors, the most important of which is the adhesion factor (Attaching and Effacing Adherance - A / E). (Garrido <italic id="emphasis-31">et al</italic>., 2006) He also has the EPEC Fimbriae pattern that helps him to assembly and bundle formation (bundle) under the control of genes on Epec Adherance Factor Plasmid (EAF) ( Nevesijac and Ravio, 2005). In addition to its possession of other virulence factors such as intimin protein and extracellular Serine Protease (ESPs) as such, it is similar to Verotoxin / Producing <italic id="emphasis-32">E. coli</italic> (VTEC / Verotoxin).(Blanco <italic id="emphasis-33">et al.,</italic> 2005; Cookson <italic id="emphasis-34">et al</italic>., 2009). <bold id="strong-5">5-2- Enterotoxigenic <italic id="emphasis-35">E.coli</italic> (ETEC):</bold> This type has the advantage of being the most common type of <italic id="emphasis-36">E. coli</italic> bacteria. It is the main cause of children's and traveler's diarrhea (Oliveira <italic id="emphasis-37">et al.,</italic> 2007), as this pattern causes acute watery diarrhea (Acute Watery Diarrhea) and leads to dehydration in children. Infants, and has the ability to produce Enterotoxins (both the Heat Stable / ST) and the Heat Labile / LT type or both, as the heat-sensitive type (LT) is similar to in its composition and function the enterotoxin produced from cholera bacteria (Qadri <italic id="emphasis-38">et al</italic>., 2005). </p>
      <p id="p-178864bdcb0a"> ETEC is characterized by its production of special adhesion agents that differ from other types of <italic id="emphasis-39">E. coli</italic>, which is Colonization Factor Antigens / CFAs. The mannose-resistant type as it has an important role in the domestication of this type to the small intestine, and (75%) of the ETEC types isolated from humans have CFAs, while the rest of E.coli types have an inactivation of the mannose-sensitive type. (Nataro and Kaper, 1998).</p>
      <p id="p-7e95c4fa0d78">
        <italic id="emphasis-40"> </italic>
      </p>
      <p id="p-48d2f1639ea8"> Nelson <italic id="emphasis-41">et al</italic>. (2004) that ETEC patterns cause diarrhea in children under five years of age, and that infection may be caused by contaminated food and drink. <bold id="strong-6">5-3- Enteroaggregative <italic id="emphasis-42">E. coli</italic> (EAEC):</bold> This type is characterized by the fact that it does not produce the intestinal toxins (Enterotoxins) With both Heat Stable / ST) and Heat-sensitive toxin. Heat Labile / LT) (Boisen <italic id="emphasis-43">et al</italic>., 2008).  The adhesion of this type of E. coli to the epithelial cells of the lining of the intestine is of the aggregated type. (Aggregative Adhesion) under the control of plasmid genes with a weight of (60) Mecadleton, ( Jenkins <italic id="emphasis-44">et al</italic>., 2005).   This pattern also causes persistent diarrhea (Persistent Diarrhoea) in infants, as well as its role in causing traveler's diarrhea ( Vernacchio <italic id="emphasis-45">et</italic> <italic id="emphasis-46">al</italic>., 2006). <bold id="strong-7">5-4- Enteroinvasive <italic id="emphasis-47">E. coli</italic> (EIEC):</bold> This pattern is characterized by its ability to invade the cells lining the large intestine, and its infection is similar to that of bacillary dysentery caused by the bacterium Shigella dysenteriae. (Vieira <italic id="emphasis-48">et al.</italic>, 2007).</p>
      <p id="p-4abe87ac964e"> The susceptibility to invasion in the EIEC and <italic id="emphasis-49">Shigella dysenteriae</italic> is dependent on the presence of a (140) mecadeltine plasmid that encodes for some of the proteins that help them invade the intestinal epithelial cells. </p>
      <p id="p-9e9388327838"> These proteins are highly antigenically similar to both EIEC and Shigella dysenteriae, as well as antigen similarity. Autosomal O-Antigen between these two bacteria, and the EIEC strains lack flagella, i.e. non-motile (Andrade <italic id="emphasis-50">et al</italic>., 2002).</p>
      <p id="p-b617aecb033a">
        <italic id="emphasis-51"> </italic>
      </p>
      <p id="p-ec0b78b2dfd0"> </p>
      <p id="p-11acdfe195d5">
        <bold id="strong-8">5-5- Enterohemorrhagic <italic id="emphasis-52">E. coli</italic> (EHEC):</bold>
      </p>
      <p id="p-4145cd7e6d99"> This type is also called (Verotoxin-Producing E. coli / VTEC) because it produces a toxin (Verotoxin) that influences viral cells. Genetically, combination and functionally with toxin (Shigatoxin)<italic id="emphasis-53"> Dysenteriae shigella</italic> , which causes this pattern. Attaching and Effacing Lesion on Epithelial Cells, possessing a plasmid of weight (60) ( Dhanashree and Mallya, 2008).</p>
      <p id="p-c6393d3318ec">
        <italic id="emphasis-54"> </italic>
      </p>
      <p id="paragraph-13"> Symptoms of EHEC infection begin with diarrhea that is not bloody (Non Bloody Diarrhoea) and Abdominal Cramp as well as Moderate Vomiting, then the symptoms develop after that to become bloody diarrhea which is the main symptom of the infection, in addition to severe dehydration and an increase in the infection. (Nausea) and stomach cramps (Stomuch Cramp) as well as the occurrence of hemolytic anemiae as well as cases of kidney failure (Gruskin, 2000).</p>
      <p id="paragraph-14">
        <italic id="emphasis-55"> </italic>
      </p>
      <p id="paragraph-15"> This pattern is characterized by the induction of two pathological cases, which are Hemorrhagic Colitis / HC Syndrome. Hemolytic Uremic Syndrom / HUS (Elliott <italic id="emphasis-56">et al.,</italic> 2001; Combs <italic id="emphasis-57">et al</italic>., 2003; Kliegman <italic id="emphasis-58">et al</italic>., 2006), as EHEC strains of the O157: H7 serotype are the main cause of HC and HUS ( Lynn <italic id="emphasis-59">et al</italic>., 2005).  <bold id="strong-9">6- Epidemiology of <italic id="emphasis-60">E. coli</italic>:</bold> <italic id="emphasis-61">E.coli</italic> infection occurs by eating food and drink contaminated with it, and usually the required dose to cause infection is very small (100-200) cells , as well as the possibility of infection with <italic id="emphasis-62">E.coli</italic> by infected and carrying animals ( Durso <italic id="emphasis-63">et al</italic>., 2004),  As there are many animals that are considered as main stores of these bacteria as in Type O157: H7 <italic id="emphasis-64">E. coli</italic>, for which cows are the main store, and these animals may not show any clear symptoms through which infection can occur (Johannessen <italic id="emphasis-65">et al</italic>., 2005). <italic id="emphasis-66">E. coli</italic> are also transmitted through its transmission from person to person, especially during epidemics, as it may be transmitted directly, especially through hand-to-hand contact, or it may be transmitted indirectly (Welinder-Olsson et al., 2003).  <italic id="emphasis-67">E. coli</italic> resist the stomach environment and have the ability to compete with other microorganisms in the gastrointestinal tract, after which it colonizes the large intestine (colon) by attaching to the cells lining the intestine and infection occurs by the cells lining the intestine and then transmitted to the bloodstream (Mead and Griffin, 1998).  There are several subtypes of <italic id="emphasis-68">E. coli</italic> bacteria that have a role in causing and spreading Diarrhea, especially among children (Todar, 2008). Enteropathogenic E.coli / EPEC) has been known since 1940 with its association with hospital-acquired diarrhea, especially in children under five years of age, and it is often transmitted. EPEC through contact with people as this contributes to the spread of this pattern and thus increased exposure to cases of diarrhea (Nelson <italic id="emphasis-69">et al.</italic>, 2004), and recent studies indicate that this pattern is widely spread in the Australian continent (Nguyen <italic id="emphasis-70">et al.,</italic> 2006).  Enteroaggregative E. coli / EAEC has also been known since 1987 by its association with cases of persistent diarrhea in children . Often this pattern is transmitted to humans by eating contaminated food and contact with people. (Nelson <italic id="emphasis-71">et al</italic>., 2004).  Enterotoxigenic E. coli (ETEC) is the main cause of travelers' diarrhea, as well as causing and spreading diarrhea among infants under five years of age . (20-30%) of cases of diarrhea (Nelson <italic id="emphasis-72">et al</italic>., 2004), and the ETEC pattern causes more than (280) million cases of diarrhea, of which (400,000) cases end in death, especially among children (Qadri <italic id="emphasis-73">et al</italic>., 2005). ).<italic id="emphasis-74"> E. coli</italic> enteroinvasive (EIEC) type causes bloody diarrhea. Statistics until (20%) of cases of bloody diarrhea return to this pattern. (Nelson <italic id="emphasis-75">et al</italic>., 2004), and that the EIEC type is less common than the EPEC and ETEC types (Nataro and Kaper, 1998). As for EHEC (Enterohemorrhagic E. coli), it is considered one of the important pathologies that cause bloody diarrhea associated with hemorrhagic colitis / HC and Colitis Hemorrhagic Syndrome (Hemi-Uremic Uremia 1997), and Ursukemia (HEM) 1997 may be mentioned. <italic id="emphasis-76">et al</italic>. This pattern is the third most common enteric pathogen. As for EHEC (Enterohemorrhagic E. coli), it is considered one of the important pathologies that cause bloody diarrhea associated with hemorrhagic colitis / HC and Colitis Hemorrhagic Syndrome (Hemi-Uremic Uremia 1997), and Ursukemia (HEM) 1997 may be mentioned. et al. This pattern is the third most common enteric pathogen.Often this pattern is transmitted to humans through ingestionContaminated drinking water by animals. The EHEC pattern causes diarrhea in various countries of the world. In the United States of America, this pattern causes (20,000) cases, including (250) deaths annually.(Armstrong <italic id="emphasis-77">et al</italic>., 1996). In 1997, 30,000 examples of diarrhea were studied, and the rate of isolation of the EHEC type was the fourth major bacterial pathogen in the United States of America (Fey <italic id="emphasis-78">et al</italic>., 2000). Brashears et al. (2003) reported that there are (74,000) cases of this type in the United States of America annually, of which at least (250) are deaths. On the Asian continent, specifically in the city of Sakai in Japan, the largest epidemic of EHEC infection was recorded in 1996, which included more than (6000) cases of hemorrhagic colitis (HC) and more than (100) cases of infection with hemolytic hyperuremia (HUS) syndrome. The source of infection was to meals that contained large quantities of legumes contaminated with this pattern (Paton and Paton, 1998).  <bold id="strong-10">7- Virulence factors</bold>: <italic id="emphasis-79">E. coli</italic> possess a number of virulence factors that have a role in their pathogenicity, and these factors include: -  <bold id="strong-11">7-1 Adhesion factor:</bold> The attachment of bacteria to the host cells is important steps in the occurrence of pathogenicity,represent asfirst step in the development of infection (Boisen <italic id="emphasis-80">et al</italic>., 2009).  Studies have indicated the presence of some filamentous structures, Outer Membrane Proteins (OMPs) as well as Lipopolysaccharide (LPS), which can be considered from the structures that help bacteria to adhere (Rocha-De-Souza <italic id="emphasis-81">et al</italic>., 2001). Fimbriae is the most important adhesion agent and their role in it Haemagglutination and epithelial sticking ( Li <italic id="emphasis-82">et al</italic>., 2009).  There are two types of haemostasis in the <italic id="emphasis-83">E. coli</italic> bacterium. Depending on the sensitivity to mannose, the Type 1 Fimbriae is sensitive to Mannose-Sensitive Haemagglutination / (MSHA), and this type of fimbria is found in (80%) of <italic id="emphasis-84">E. coli</italic> strains that cause enteritis. (Graham <italic id="emphasis-85">et al</italic>., 2001), and the second type of lethargy (P - Fimbriae) is: Mannose-Resistant Haemagglutination / MRHA (Greenwood <italic id="emphasis-86">et al</italic>., 2002)   In general, <italic id="emphasis-87">E. coli</italic> have many adhesion factors that help them adhere to cells and cause infection, including:Colonization Factor Antigen - CFA /), Type1-Fimbriae, P-Fimbriae, and Intimin (non Fimbriae adhesion), in addition to Enteropathogenic <italic id="emphasis-88">E.coli</italic> Adherance Factor ,Colonization Factor Antigen (CFA II) and CFA I (the most common strains of E.coli bacteria that cause diarrhea( Oliveira <italic id="emphasis-89">et al</italic>., 2007) The process of bacterial adhesion requires the presence of two main factors, the receptor and the linker (Ligand). The receptor is usually known as specialized carbohydrates or peptide chains on the surfaces of eukaryotic cells.(Prescott, <italic id="emphasis-90">et al</italic>., 2005) <bold id="strong-12">7-2 Toxin Production:</bold> Gram-negative bacilli have an endotoxin that consists ofLipopolysaccharide (Mandell <italic id="emphasis-91">et al</italic>., 1995).Also, Exotoxins, including hemolysin and cytotoxic necrotising factor (CNFT) (Faxman <italic id="emphasis-92">et al</italic>., 1995). The strains producing hemolysin are characterized by being more virulent than those strains not producing it, as these strains obtain the iron element through their analysis. Human red blood cells, and that genes responsible for the manufacture and secretion of the enzyme hemolysin may be carried by large plasmids, and in practice it has been found that pathogenic strains possess a number of genes on the chromosome (Cross <italic id="emphasis-93">et al</italic>., 1990).As for the two factors Cytotoxic Necrotising Factor (CNF1 and CNF2). These factors are produced by some strains of <italic id="emphasis-94">E. coli</italic> bacteria, causing necrosis in various cells. Therefore, they are considered to be important virulence factors in the activity of these bacteria.(Li <italic id="emphasis-95">et al</italic>., 2009)</p>
      <p id="paragraph-16">In addition to the above, <italic id="emphasis-96">E.coli</italic> secrete Enterotoxins, and it is of two types, namely, the heat-stable toxin (ST)and the heat-sensitive toxin (LT).It was found that the strains of <italic id="emphasis-97">E.coli</italic> that produce toxins Heat Stable (ST) causes cases of diarrhea in children, and there are several types of this toxin produced from <italic id="emphasis-98">E.coli</italic> bacteria isolated from humans and animals (STh, ST1b, STp and ST1a), and it was found that the two types(STh and ST1b) are the two predominant in humans, and two (ST) toxins resist boiling for (Todar, 2008).</p>
      <p id="paragraph-17">
        <italic id="emphasis-99"> </italic>
      </p>
      <p id="paragraph-18"> As for the toxin Labile Heat (LT), it was mentioned by Guerrant and Steiner (2005). The strains that produce this toxin cause watery diarrhea in children, as well as this toxin. The toxin in the cholera bacterium is similar to the toxin called (Cholera toxin). Some strains of <italic id="emphasis-100">E. coli</italic> are able to produce toxins.The toxin-like produced by the Shigella dysenteriae bacterium, represented by toxin(Shiga toxin), which is also known as two toxins (Verotoxin) (Jandu et al., 2009). These two toxins are composed of two subunits: 5B: 2A, which, under Unit B, bind to the Glycolipid receptors, namely the Globotriasyl Ceramide (Gb3) present. On the surfaces of eukaryotic cells(Greenwood <italic id="emphasis-101">et al</italic>., 2002), While the A1 unit possesses the toxic activity of the enzyme N-glycosidase, which leads to cell killing by inhibiting the structure of protein, as it works on the ribosome (under the large unit 60S) and the A1 part of the toxin affects the rRNA 28S and thus affects the elongation phase within the translation process when building the protein, which leads to the death of target cells such as endothelial cells of the kidney and epithelial cells of the intestine or any cell possessing the receptor Gb3, and this causes various conditions including hemorrhagic colitis (HC) and the syndrome Hemolytic hyperuremia (HUS) induced by EHEC patterns (Abe <italic id="emphasis-102">et al</italic>., 2008), and thus it is a major virulence factor for EHEC in humans (Hoey <italic id="emphasis-103">et al.</italic>, 2002) <bold id="strong-13">7-3 Protease Production:</bold> The protease enzyme is one of the important virulence factors possessed by bacterial species that help them in causing infection, as this enzyme works to decompose the protein, and it is excreted outside the cell and can be extracted from the external environment, this enzyme is produced by many bacterial types including: <italic id="emphasis-104">Escherichia coli</italic>, <italic id="emphasis-105">Staphylococcus aureus</italic>,<italic id="emphasis-106">Bacillus spp</italic>. ,<italic id="emphasis-107">Pseudomonas </italic> spp., <italic id="emphasis-108">Streptococcus pyogenes, Proteus mirabilis</italic>(Buhling <italic id="emphasis-109">et al.,</italic> 2004). Protease enzymes have different characteristics depending on their activity and composition, and they can be classified according to the molecular weight and the charge they carry, or according to the base material they work on, or according to the active site (Jewell, 2000)     The protease enzymes were divided into two types on the basis of the site of action of these enzymes, namely the first type, called Exopeptidases, which work on the peptide chains of the carboxylic end or the amino end, and the second type of these enzymes are called Endopeptidases and work on the internal protein bonds . Protease enzymes are also divided on the basis of the organisms that produce them, as these enzymes are produced by bacteria, fungi, and protozoa (Atlas <italic id="emphasis-110">et al</italic>., 1995). The most important division in the classification of these enzymes is on the basis of groups catalytic groups present in the active site four groups include serine and metal proteases Proteases Metallo and Proteases Aspartic as well as Cysteins Proteases, and these four groups of Proteases are of the Endopeptidase type and are found in all living organisms, and three of these four groups are produced by the bacteria which are Serene, Metallic and Systeine(Jewell, 2000). <bold id="strong-14">7- 4 the capsule:</bold> The capsule is one of the virulence factors that it consists of Polysaccharide, which may be possessed by <italic id="emphasis-111">E. coli</italic>, which is an extracellular substance that has a role in the serotyping of bacteria, as well as its role in<italic id="emphasis-112"> </italic> Protecting bacteria from the process of phagocytosis and thus increase their pathogenicity(Johnson and O'Bryan, 2004).It has been indicated that the type K1 <italic id="emphasis-113">E. coli</italic> causes many different diseases, especially in children, including sepsis and meningitis, as well as other clinical diseases (King <italic id="emphasis-114">et al</italic>., 2007).<italic id="emphasis-115"/> <bold id="strong-15">8- Antimicrobials:</bold> Antimicrobial resistance by bacteria is one of the biggest health and economic problems in the world, prompting researchers to investigate modern antimicrobials to overcome resistant bacterial isolates that increase the mortality and epidemiology (Preston <italic id="emphasis-116">et al</italic>., 1997;Ang) and antibiotics are organic substances produced by microorganisms that have effectiveness against other types of microorganisms, and at the present time their production has become synthetic on a large scale(Prescott <italic id="emphasis-117">et al</italic>., 2005) for its use in treating various infections.  Antimicrobial agents differ in terms of their mechanism of action and their effect, and that depends on their chemical composition, and the persistence of the action depends on the appropriate dose and the permeability of the antimicrobial to the tissues ( Greenwood <italic id="emphasis-118">et al</italic>., 2002). Antimicrobials are divided in terms of action into two groups: Broad Spectrum Antibiotics, which have an effect on Gram-negative and positive bacteria, and Narrow-spectrum antibiotics. (Narrow Spectrum Antibiotics) which have an effect on a specific or individual group of microorganisms (Doi <italic id="emphasis-119">et al</italic>., 2002). </p>
      <p id="paragraph-19"> It is necessary to distinguish between bacterial and viral infections to avoid the unnecessary use of antimicrobials that lead to the development of resistance to these antibiotics, as the administration of antibacterial drugs depends on knowledge of the patient’s age and diagnosis of the condition, as well as the severity of symptoms (Ebell, 2004).The indiscriminate use of antimicrobials, as well as taking them in high doses, may lead to the emergence of bacterial isolates resistant to many of the antibiotics used, which threatens the health of the patient.(Damoiseaux, 2005).</p>
      <p id="paragraph-20"> <bold id="strong-16">8-1- Lactamases:</bold> There are many different types of beta-lactam antagonists that are of great therapeutic value and importance as an anti-bacterial material, including: <bold id="strong-17">8-1-1- Penicillins:</bold> It is a group of antagonists that contains a chemical nucleus (6-amino pencillanic acid) that consists of a ring of-lactam fused with a ring (Thiozalidin) connected to the nucleus. Side chains with different roots added to obtain different derivatives of Atlas <italic id="emphasis-120">et al</italic>. , 1995),The mechanism of action of these antibodies is to inhibit the process of building the cell wall of the bacteria by binding to the target site represented by the proteins associated with penicillin (PBPs) (Levinson and Jawetz, 2000).  A- Pipracillin:  This antagonist belongs to the Ureido pencillin group, as it contains in combination a penicillin nucleus and a side chain derived from urea, the benefit of which is to facilitate the passage of the antagonist through the channels found in the cell membranes of bacteria, as well, tfhis antagonist has broad activity against gram-positive and negative bacteria, and is effective against aerobic bacteria (Mahon and Manuselis, 2000).  <bold id="strong-18">B- Ticarcillin:</bold> This antagonist belongs to the Carboxy pencillins groupIt has activity against <italic id="emphasis-121">E.coli</italic> and Pseudomonas aeruginosa, but it is less effective against bacteria that produce the enzymes that degrade them, especially <italic id="emphasis-122">Klebsiella pneumoniae</italic>.(Mandell <italic id="emphasis-123">et al</italic>., 1995).<bold id="strong-19"> </bold><bold id="strong-20">8-1-2 Cephalosporins:</bold> It is a group of antibiotics that contain a nucleus (7- amino cephalosporinic acid), Which consists of a beta-lactam ring fused with a ring (dihydrothiazine) and connects to the nucleus by side chains to which different roots are added to obtain different derivatives of cephalosporins, cephalosporins are similar to penicillins in terms of the mechanism of action and the target site of the antagonist (Murray <italic id="emphasis-124">et al</italic>., 1999). <bold id="strong-21">A- </bold><bold id="strong-22">Cefotaxime, Ceftazidime, and Cefixime:</bold> These antagonists belong to the third generation cephalosporin group and have a wide spectrum of action, especially against Gram-negative selective anaerobic bacilli such as <italic id="emphasis-125">E. coli</italic> and spp. Proteus (Murray <italic id="emphasis-126">et al</italic>., 1999) and its high affinity for binding to the target site in the cell wall (Baron <italic id="emphasis-127">et al.</italic>, 1999), and it is noticeable nowadays that the high level of resistance to Cefotaxime is due to the ability of E.coli bacteria to produce that --Lactamase is broad-spectrum enzymes, particularly CTX-M-15, which is characterized by a high affinity for this antagonist (Woodford <italic id="emphasis-128">et al</italic>., 2006). <bold id="strong-23">B- Cefoxitin:</bold> It is an antagonist belonging to the second-generation cephalosporin group, this antagonist contains an α-methoxy group that is associated with the-lactam ring.It is resistant to most types of beta-lactamase enzymes, and is considered an effective antidote to som Gram-negative bacteria, such as <italic id="emphasis-129">E. coli </italic> and<italic id="emphasis-130"> K.pneumoniae</italic> ( Philippon <italic id="emphasis-131">et al</italic>., 2002). <bold id="strong-24">C- Cefepime:</bold> It is an antagonist belonging to the fourth-generation cephalosporin group, and it is considered one of the modern, broad-spectrum antibiotics that are effective against members of the intestinal family, includingEnterobacter as well as Pseudomonas and Neisseria (Baron <italic id="emphasis-132">et al</italic>., 1999). <bold id="strong-25">8-1-3 Monobactam:</bold> Aztreonam was the first antagonist in this group, and it has lethal activity against Gram-negative bacteria, and inhibitory activity for members of the intestinal family.(Baron <italic id="emphasis-133">et al</italic>., 1999). <bold id="strong-26">8-1-4- Carbapenem:</bold> For example (Imipenem and Meropenem), these antibiotics have broad-spectrum efficacy against most types of the intestinal family, and are used to treat bacterial infections <italic id="emphasis-134">E. Coli, P.aeruginosa,</italic> and <italic id="emphasis-135">Klebsiella </italic> spp., Which are resistant to penicillins, and is used to treat bacteremia, endocarditis and acute urinary tract infections (Christopher <italic id="emphasis-136">et al.</italic>, 1991). </p>
      <p id="paragraph-21">
        <bold id="strong-27">8-2 Aminoclycosides (Amioglycosides</bold>
      </p>
      <p id="paragraph-22"> It is a group of antibacterials that share common properties Synthetics and pharmacokinetics, they act inside the cell by binding to ribosomes.In a way that causes wrong amino acid sequences to enter the peptide chains, So the resulting abnormal proteins would be fatal to the bacteria(Tierney <italic id="emphasis-137">et al</italic>., 1999).</p>
      <p id="paragraph-23">
        <italic id="emphasis-138"> </italic>
      </p>
      <p id="paragraph-24"><bold id="strong-28">Amikacin:</bold> It is an antagonist of the aminoclycoside group, bacteria resistance develops, It has a pronounced slow (Tierney <italic id="emphasis-139">et al</italic>., 1999). Amikacin is used against many types of Gram-negative intestinal bacteria, including <italic id="emphasis-140">E. coli, Proteus</italic>, and <italic id="emphasis-141">Enterobacter</italic> as well as <italic id="emphasis-142">Pseudomonas</italic>. This antagonist is characterized by its neurotoxicity.Ototoxicity and (Nephrotoxic) levels should be taken into account in patients with renal failure (Tierney <italic id="emphasis-143">et al</italic>., 1999).  8-3 Quinolnes:  They are different derivatives of the antagonist Nalidixic acid, these antagonists have a wide spectrum of activity against many bacterial species, and the way all quinolins act is to inhibit bacterial DNA synthesis by inhibiting the action of an enzyme Topoisomerase II, or the DNA gyrase, is responsible for making the bacterial chromosome super-coiled, leading to rapid death. Bacteria ( Madigan <italic id="emphasis-144">et al</italic>., 2006)  In addition to inhibiting the action of the enzyme (Topoisomerase IV), as this hinders the separation of DNA replicated during the process of cell division (Katzung, 2001). Fluoroquinolinate antagonists have high efficacy against the intestinal family, reach high levels of tissue and are excreted with diuresis, which makes them important in the treatment of urinary tract infection (Well <italic id="emphasis-145">et al</italic>., 1998). <bold id="strong-29">8-4-Lactamase Inhibitors:</bold>  Beta-lactamase inhibitors are called suicide inhibitors (Francioll, 1991) because they create stable complexes between them and the enzyme as a result of a chemical reaction consisting of several steps leading to cutting the way to the enzyme. Thus, it prevented it from breaking down the effective beta-lactam antagonist ( Rotschafer and Ostergarrd, 1995). These inhibitors are weak antibacterial agents, but are able to inhibit plasmid and chromosomal (Mims <italic id="emphasis-146">et al</italic>., 1995).  <bold id="strong-30">Salbactam:</bold> Salbactam is a semi-finished antibiotic, and the combination is(6- desamino pencillin sulfone), an effective inhibitor of most clinically important beta-lactamase enzymes, it is more broad-spectrum than clavulanic acid but less effective, Imitazhma inhibitor not to possess viability inducing enzymes Chromosome so used mixed with anti-B-lactam antibiotics to treat the resulting injuries from the intestinal bacteria producing enzymes Cephalosporins Induced (Inducible -Cephalosporinase), inhibitor and has Alsllbecktam the effectiveness of the synergistic with anti-B-lactam antibiotics it is there Mixed with ampicillin in a ratio of 1-2(1 g ampicillin - 0.5 g sulbactam), which is poorly absorbed by the intestine, is therefore taken intravenously (Ripa <italic id="emphasis-147">et al</italic>., 1990) (intravenous administration). The mixture (ampicillin - sulbactam) has efficacy against both negative and gram positive bacteria, as well as against anaerobic bacteria, as most studies indicate the possibility of using the mixture (ampicillin - sulbactam) as a preliminary treatment for its high efficacy and low toxicity, as well as the absence of side effects and its low cost. The mixture is used to treat many infections, including urinary tract infections (Oliver <italic id="emphasis-148">et al</italic>., 1999). </p>
    </sec>
    <sec>
      <title id="t-d82bb2121b44">
        <bold id="s-38ceb444c003">References</bold>
      </title>
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